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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76157766_76158005_F

Intron Information:

Intron Rank:
137034
Intron Class:
major
Intron Phase:
Intron Coordinates:
76157766 - 76158005
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GTGTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
77.5
0.62
0.9
78.3
34.9
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
62.8
0.49
1.6
76.14
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023793
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042375
76157418 - 76161450
4033