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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76158146_76160738_F

Intron Information:

Intron Rank:
137032
Intron Class:
major
Intron Phase:
Intron Coordinates:
76158146 - 76160738
Intron Length:
2593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCACC
5'SS Class:
major
3'SS Sequence:
TCCTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TGGTACTAACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.7
38.4
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
86.4
0.82
0.7
84.6
23.3
Minor 5ss
40.7
-1
2.8
53.4
43.4
Minor BPS
47
-0.2
2.1
60.81
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023793
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018510
76157919 - 76161117
3199