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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76197650_76200552_F

Intron Information:

Intron Rank:
144609
Intron Class:
major
Intron Phase:
Intron Coordinates:
76197650 - 76200552
Intron Length:
2903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.5
0.66
1
76.7
37.3
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
75.4
0.88
1.5
88.94
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027919
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033368
76197400 - 76202172
4773
ENSAPLT00000031187
76197400 - 76215455
18056
ENSAPLT00000018952
76197400 - 76205148
7749