About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76200631_76202103_F

Intron Information:

Intron Rank:
144616
Intron Class:
major
Intron Phase:
Intron Coordinates:
76200631 - 76202103
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTATT
5'SS Class:
major
3'SS Sequence:
CCTTCCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTCACTCATGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.2
83.1
35.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
76.6
0.6
0.8
73.7
30.2
Minor 5ss
37
-1.5
3
52
44.5
Minor BPS
44.5
-0.4
2.2
62.36
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027919
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033368
76197400 - 76202172
4773