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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76200631_76212223_F

Intron Information:

Intron Rank:
144613
Intron Class:
major
Intron Phase:
Intron Coordinates:
76200631 - 76212223
Intron Length:
11593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTATT
5'SS Class:
major
3'SS Sequence:
ATGTTTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTTTTCTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.2
83.1
35.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.6
0.58
0.9
74.8
39.7
Minor 5ss
37
-1.5
3
52
44.5
Minor BPS
57
0.2
1.8
71
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027919
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031187
76197400 - 76215455
18056