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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7620246_7633032_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7620246 - 7633032
Intron Length:
12787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGAGTAA
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTGTATT
Flanking Amino Acid:
DSDRQHAGDEREDGELEDGE
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.4
56.1
39.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.4
0.82
0.7
80.7
24.7
Minor 5ss
29.4
-2.4
3.4
37.6
47.2
Minor BPS
50.1
0.08
1.9
77.49
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027404
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027209
7619700 - 7668878
49179