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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76215478_76216178_F

Intron Information:

Intron Rank:
139273
Intron Class:
major
Intron Phase:
Intron Coordinates:
76215478 - 76216178
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CTTACCCAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
85.9
0.81
0.8
77.5
36.7
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
53.3
0.18
2.1
77.43
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029139
76215476 - 76216583
1108