Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7633214_7634637_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7633214 - 7634637

Intron Length:

1424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAG

U12 Branch Point Sequence:

AGAGAATTATTT

Flanking Amino Acid:

SKRRRRDKHKHNSPSSDDSS

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

1.1

78.1

31.1

Major BPS

63.7

0.34

1.5

63.4

Major PPT

95.2

1.02

0.5

28.1

Minor 5ss

29.1

-2.4

2.6

31.9

42.1

Minor BPS

41.6

-0.5

1.9

54.41

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027404

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027209

7619700 - 7668878

49179

ENSAPLT00000022466

7611723 - 7668878

57156