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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76340870_76341115_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
76340870 - 76341115
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAGGCATA
5'SS Class:
weak_major
3'SS Sequence:
CTTTTCGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GAATGCTGATTG
Flanking Amino Acid:
DPQLSRSPPCCTVSCTLFLA
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.1
0.26
1.2
62.2
43.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
80.7
0.69
0.8
73.4
37.1
Minor 5ss
44.5
-0.6
3.2
66.5
44.6
Minor BPS
41.8
-0.7
2
43.26
41.9

Associated Gene:

Gene:
PDIA6
Ensembl Gene ID:
ENSAPLG00000010864
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031342
76340827 - 76349765
8939