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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76341258_76341580_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76341258 - 76341580
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
SLWLVEFYAPWCGHCQRLTP
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
82.4
29.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68.9
0.43
1.1
71.6
31.9
Minor 5ss
34.1
-1.8
3.2
46.4
43
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
PDIA6
Ensembl Gene ID:
ENSAPLG00000010864
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031342
76340827 - 76349765
8939
ENSAPLT00000019611
76341088 - 76350734
9647
ENSAPLT00000011347
76341088 - 76361379
20292