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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76341639_76342343_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76341639 - 76342343
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTTGTCTTAATT
Flanking Amino Acid:
EWKKAATALKGVVKVGAVDA
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.7
0.71
0.8
76.5
32.1
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
72.6
0.79
1.4
82.74
39.5

Associated Gene:

Gene:
PDIA6
Ensembl Gene ID:
ENSAPLG00000010864
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011347
76341088 - 76361379
20292
ENSAPLT00000031342
76340827 - 76349765
8939
ENSAPLT00000019611
76341088 - 76350734
9647