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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76343069_76344195_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76343069 - 76344195
Intron Length:
1127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGAG
5'SS Class:
major
3'SS Sequence:
TTGTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTGTTTCTCACA
Flanking Amino Acid:
RSGGYSSGRQSRESGGGDKK
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.1
65.3
40.7
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
84.7
0.78
0.8
80.1
32
Minor 5ss
31
-2.2
3.3
40.3
45.8
Minor BPS
48.7
-0.1
2
66.89
40.2

Associated Gene:

Gene:
PDIA6
Ensembl Gene ID:
ENSAPLG00000010864
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011347
76341088 - 76361379
20292
ENSAPLT00000031342
76340827 - 76349765
8939
ENSAPLT00000019611
76341088 - 76350734
9647