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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76344866_76345836_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76344866 - 76345836
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
GTGACTTAAACT
Flanking Amino Acid:
VNQMLASRYGIRGFPTIKIF
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
69
0.47
1
69.9
32.6
Major PPT
83.3
0.75
0.8
77.3
30.6
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
58
0.33
1.7
73.14
43.8

Associated Gene:

Gene:
PDIA6
Ensembl Gene ID:
ENSAPLG00000010864
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031342
76340827 - 76349765
8939
ENSAPLT00000019611
76341088 - 76350734
9647
ENSAPLT00000011347
76341088 - 76361379
20292