Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7634764_7636346_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7634764 - 7636346

Intron Length:

1583

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTATTT

5'SS Class:

major

3'SS Sequence:

CCCTTTCATACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TGCTTCTAAACA

Flanking Amino Acid:

YRDYDSSFSQHGHVSGNYMS

Intron Amino Acid Position:

208

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

74.4

36.8

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

77.4

0.62

0.8

31.7

Minor 5ss

42.6

-0.8

3.4

64.9

46.4

Minor BPS

63.5

0.42

1.7

71.26

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027404

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027209

7619700 - 7668878

49179

ENSAPLT00000022466

7611723 - 7668878

57156