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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76348657_76349428_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76348657 - 76349428
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAT
5'SS Class:
major
3'SS Sequence:
TGTCTCATCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTCTTAAAAT
Flanking Amino Acid:
FSEQGINEFLRELSVGRGST
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.3
33.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.9
0.6
0.9
74.1
35.2
Minor 5ss
41.3
-1
2.9
57.7
46.5
Minor BPS
60.5
0.41
1.7
76.83
39.5

Associated Gene:

Gene:
PDIA6
Ensembl Gene ID:
ENSAPLG00000010864
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031342
76340827 - 76349765
8939
ENSAPLT00000019611
76341088 - 76350734
9647
ENSAPLT00000011347
76341088 - 76361379
20292