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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76349526_76361277_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76349526 - 76361277
Intron Length:
11752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCAATTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
GCAATTTTAACA
Flanking Amino Acid:
VEPWDGKDGELSLKMLDSSK
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
67.1
0.39
1
61.6
43.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
59.6
0.3
1.3
61.06
39

Associated Gene:

Gene:
PDIA6
Ensembl Gene ID:
ENSAPLG00000010864
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011347
76341088 - 76361379
20292