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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76353121_76353240_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
76353121 - 76353240
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
GGTGTGTCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATGAC
U12 Branch Point Sequence:
CCCCCGGGAAAT
Flanking Amino Acid:
ALRVFVESVLRYGLPVNFQA
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
58.2
0.2
1
49.5
35.1
Major PPT
53.2
0.07
1.1
48.8
44.2
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
34.3
-1.1
2.4
46.81
45

Associated Gene:

Gene:
ATP6V1C2
Ensembl Gene ID:
ENSAPLG00000010549
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011024
76352052 - 76370640
18589