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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76354262_76354875_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76354262 - 76354875
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTCCCTCCCACA
Flanking Amino Acid:
LSDMVVPRSTKMIAEDAEGG
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
77.9
0.63
0.7
72.3
26
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
42.5
-0.6
2.1
57.53
42

Associated Gene:

Gene:
ATP6V1C2
Ensembl Gene ID:
ENSAPLG00000010549
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011024
76352052 - 76370640
18589