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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76354945_76356675_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76354945 - 76356675
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
CTTGTGCTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTTACT
Flanking Amino Acid:
YLITLLVVVPKSSYIQWQKT
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.6
38
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
63.6
0.31
1.1
62.8
37.6
Minor 5ss
31.8
-2.1
3.3
38.6
40.8
Minor BPS
60.6
0.41
1.9
82.01
39.1

Associated Gene:

Gene:
ATP6V1C2
Ensembl Gene ID:
ENSAPLG00000010549
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011024
76352052 - 76370640
18589