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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76358896_76359604_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76358896 - 76359604
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTTTTTTATTG
Flanking Amino Acid:
LKNILEALSKQMTQIETDLK
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.7
0.69
0.9
73.6
41.7
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
53.2
-0
1.6
57.53
38.9

Associated Gene:

Gene:
ATP6V1C2
Ensembl Gene ID:
ENSAPLG00000010549
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011024
76352052 - 76370640
18589