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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76359700_76363651_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76359700 - 76363651
Intron Length:
3952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCGGCTTTAATG
Flanking Amino Acid:
KVQENLLANGVDLISYLTRF
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
60.1
0.18
1.5
58.09
44.8

Associated Gene:

Gene:
ATP6V1C2
Ensembl Gene ID:
ENSAPLG00000010549
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011024
76352052 - 76370640
18589