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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76375620_76376077_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76375620 - 76376077
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
ATAAACTTAACA
Flanking Amino Acid:
SLSAGRSLPEWLSDRKKRAL
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
78.2
0.63
0.9
72.5
37.7
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
66.4
0.51
1.5
73.2
37.6

Associated Gene:

Gene:
NOL10
Ensembl Gene ID:
ENSAPLG00000009885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010376
76375554 - 76423142
47589
ENSAPLT00000010373
76375554 - 76420038
44485
ENSAPLT00000031365
76375554 - 76421560
46007