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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76382834_76384292_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76382834 - 76384292
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ACTTACTTATTT
Flanking Amino Acid:
RFLNSLQTDASENNVCDINP
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
72.3
37.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
38.8
-1.3
3.3
53.2
38.5
Minor BPS
58.9
0.36
1.8
75.17
41.9

Associated Gene:

Gene:
NOL10
Ensembl Gene ID:
ENSAPLG00000009885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031365
76375554 - 76421560
46007
ENSAPLT00000010376
76375554 - 76423142
47589
ENSAPLT00000010373
76375554 - 76420038
44485