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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76384953_76385304_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76384953 - 76385304
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
GAATGTCTAACT
Flanking Amino Acid:
CALSSVTADTEIDCLPSISA
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73
33.2
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
82.9
0.74
0.9
77.1
37.1
Minor 5ss
30.9
-2.2
2.6
29.7
36.6
Minor BPS
48.5
-0
2.1
67.69
42.6

Associated Gene:

Gene:
NOL10
Ensembl Gene ID:
ENSAPLG00000009885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031365
76375554 - 76421560
46007
ENSAPLT00000010376
76375554 - 76423142
47589
ENSAPLT00000010373
76375554 - 76420038
44485