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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76393840_76410102_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76393840 - 76410102
Intron Length:
16263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
GTAATATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
CTTTCTGTAATA
Flanking Amino Acid:
APKMNIYYMPVLGPAPRWCS
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
65.3
0.35
1
55.3
44.5
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
61.2
0.35
2
74.34
38.4

Associated Gene:

Gene:
NOL10
Ensembl Gene ID:
ENSAPLG00000009885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031365
76375554 - 76421560
46007
ENSAPLT00000010376
76375554 - 76423142
47589
ENSAPLT00000010373
76375554 - 76420038
44485