About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76410230_76411733_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76410230 - 76411733
Intron Length:
1504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TCCTCTGTAATT
Flanking Amino Acid:
FVTRKDLENLGLAHLIGSTL
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
57.7
0.32
2
74.65
43.4

Associated Gene:

Gene:
NOL10
Ensembl Gene ID:
ENSAPLG00000009885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031365
76375554 - 76421560
46007
ENSAPLT00000010376
76375554 - 76423142
47589
ENSAPLT00000010373
76375554 - 76420038
44485