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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76412041_76412447_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76412041 - 76412447
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
CTATATTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTCTCTTTATAT
Flanking Amino Acid:
ETRAQRVQLKKLPKVNKELA
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
76.1
0.59
0.8
74
36.1
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
64
0.52
1.7
80.79
41.2

Associated Gene:

Gene:
NOL10
Ensembl Gene ID:
ENSAPLG00000009885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010376
76375554 - 76423142
47589
ENSAPLT00000010373
76375554 - 76420038
44485
ENSAPLT00000031365
76375554 - 76421560
46007