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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76415539_76419821_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76415539 - 76419821
Intron Length:
4283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATGTTCTCACAT
Flanking Amino Acid:
KDSAKKQKLMKHQITKDLLQ
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.5
35.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.6
0.49
0.9
65.4
36.2
Minor 5ss
37.3
-1.4
3.2
48.7
41.3
Minor BPS
48.1
-0
1.9
67.42
43.3

Associated Gene:

Gene:
NOL10
Ensembl Gene ID:
ENSAPLG00000009885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010373
76375554 - 76420038
44485