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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7641604_7643123_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7641604 - 7643123
Intron Length:
1520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTTCTTATTT
Flanking Amino Acid:
KYFLEGRCIKGEQCKFDHDA
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85
0.79
0.7
80.7
30.3
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
68.8
0.67
1.6
82.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014287
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014894
7641517 - 7649254
7738