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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76420755_76423022_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76420755 - 76423022
Intron Length:
2268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCAATATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTTCTTTCAAT
Flanking Amino Acid:
SKQATFRLKKSEQQKKQQEA
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.1
30.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
75.8
0.58
1
66.3
43.6
Minor 5ss
40.1
-1.1
3.1
55
49.2
Minor BPS
68.2
0.65
1.8
88.96
35.8

Associated Gene:

Gene:
NOL10
Ensembl Gene ID:
ENSAPLG00000009885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010376
76375554 - 76423142
47589