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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7644971_7645697_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7644971 - 7645697
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCCAGGTTCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
ATATGTATAATC
Flanking Amino Acid:
TVDLAHKIGKNPGPGPGMSQ
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
53.6
0.08
1.2
48.5
43.3
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
48.6
-0.1
2
62.29
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014287
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014894
7641517 - 7649254
7738