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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7646626_7647749_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7646626 - 7647749
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGA|GCAAAGATG
5'SS Class:
weak_major
3'SS Sequence:
CCTCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTACTTGAATC
Flanking Amino Acid:
SVSSQGQRAMNDNVNWYSSS
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.3
62.8
41.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.4
0.77
0.7
83.2
25.1
Minor 5ss
26.2
-2.7
4.1
35.5
42.2
Minor BPS
67
0.51
1.4
75.99
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014287
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014894
7641517 - 7649254
7738