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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76494914_76495086_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76494914 - 76495086
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTTTATGAGT
Flanking Amino Acid:
LGAGFDCASKTEIQLVQSIG
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.9
0.83
0.7
84.9
29.9
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
48.8
-0
1.9
70.74
41

Associated Gene:

Gene:
ODC1
Ensembl Gene ID:
ENSAPLG00000009531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009969
76457110 - 76500422
43313