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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76495260_76495546_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76495260 - 76495546
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TAGAACTTAAAC
Flanking Amino Acid:
MKVARAHPKAKLVLRITTDD
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
80
0.68
0.8
72.7
37.5
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
55
0.14
1.7
63.22
41.3

Associated Gene:

Gene:
ODC1
Ensembl Gene ID:
ENSAPLG00000009531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009969
76457110 - 76500422
43313