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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76495682_76495857_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76495682 - 76495857
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
AAAACAGCAACA
Flanking Amino Acid:
RELDLAIVGVSFHVGSGCTD
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
71.3
37.1
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
84.7
0.78
0.7
80.7
24.5
Minor 5ss
33
-1.9
3
40.9
45.3
Minor BPS
40.4
-0.7
2.2
50.87
39.4

Associated Gene:

Gene:
ODC1
Ensembl Gene ID:
ENSAPLG00000009531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009969
76457110 - 76500422
43313