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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76495940_76496240_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76495940 - 76496240
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
AATTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTTCTTAACA
Flanking Amino Acid:
SDARCVFDMGAELGFNMYLL
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.7
40.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.9
0.56
0.9
71.9
38.2
Minor 5ss
39.1
-1.2
3
46.8
42.6
Minor BPS
84.6
1.08
1
86.69
32.1

Associated Gene:

Gene:
ODC1
Ensembl Gene ID:
ENSAPLG00000009531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009969
76457110 - 76500422
43313