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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76497730_76497815_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76497730 - 76497815
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTACTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAGCACT
Flanking Amino Acid:
IVLKEQTGSDDEDDANDKTL
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.4
0.71
0.8
73
37.1
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
47
-0.1
2.4
79.51
41.8

Associated Gene:

Gene:
ODC1
Ensembl Gene ID:
ENSAPLG00000009531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009969
76457110 - 76500422
43313