About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76497929_76498205_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76497929 - 76498205
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AACTAATTATCC
Flanking Amino Acid:
HAHVKPVLQKRPKPDDSCYS
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.1
35.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
82.4
0.73
0.7
81.3
23.9
Minor 5ss
35
-1.7
3.4
46.3
49
Minor BPS
46.2
-0.3
2
56.47
41.3

Associated Gene:

Gene:
ODC1
Ensembl Gene ID:
ENSAPLG00000009531
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009969
76457110 - 76500422
43313