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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76526796_76527076_R

Intron Information:

Intron Rank:
155364
Intron Class:
major
Intron Phase:
Intron Coordinates:
76526796 - 76527076
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.2
81.4
32.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
31.4
-2.1
2.5
36.7
40.4
Minor BPS
68.1
0.65
1.7
84.43
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031084
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044934
76526464 - 76527363
900