Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76545099_76552818_R

Intron Information:

Intron Rank:

146439

Intron Class:

major

Intron Phase:

Intron Coordinates:

76545099 - 76552818

Intron Length:

7720

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGCAGGC

5'SS Class:

major

3'SS Sequence:

TTTCTCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

TAATGTATAACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.2

56.1

42.6

Major BPS

0.45

0.9

67.6

25.3

Major PPT

0.92

0.6

Minor 5ss

34.9

-1.7

3.6

50.4

46.2

Minor BPS

48.4

-0.2

2.1

58.37

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026127

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035704

76536368 - 76552896

16529