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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76595201_76595730_R

Intron Information:

Intron Rank:
131425
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
76595201 - 76595730
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GGGATGCTGACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACGTAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.2
34.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
53.5
0.08
1.2
45.9
45.8
Minor 5ss
28.3
-2.5
3.1
31.3
36.6
Minor BPS
53.2
0.18
1.8
68.45
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017913
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037781
76586999 - 76597785
10787