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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76595201_76596850_R

Intron Information:

Intron Rank:
131423
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
76595201 - 76596850
Intron Length:
1650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTCAT
5'SS Class:
major
3'SS Sequence:
GGGATGCTGACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACGTAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
69.2
43.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
53.5
0.08
1.2
45.9
45.8
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
53.2
0.18
1.8
68.45
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017913
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034268
76594634 - 76597785
3152