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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76596985_76597620_R

Intron Information:

Intron Rank:
131427
Intron Class:
major
Intron Phase:
Intron Coordinates:
76596985 - 76597620
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTGT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCATAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.5
40.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
40.3
-1.1
3.1
52.7
46.4
Minor BPS
58.7
0.35
1.9
80.54
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017913
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037781
76586999 - 76597785
10787