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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76636099_76679155_R

Intron Information:

Intron Rank:
134662
Intron Class:
major
Intron Phase:
Intron Coordinates:
76636099 - 76679155
Intron Length:
43057

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CCCTTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.3
28.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
90.8
0.92
0.7
89
26.5
Minor 5ss
24
-3
4
39.6
46.4
Minor BPS
43.7
-0.4
1.8
54.65
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044820
76635918 - 76679216
43299