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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7664418_7666243_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7664418 - 7666243
Intron Length:
1826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
TGCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTCACTCCAGCA
Flanking Amino Acid:
GSHSFLRGLFGGNTRVEEAC
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.7
45
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
81.7
0.71
0.8
73
37.3
Minor 5ss
37.4
-1.4
3
38.2
46.7
Minor BPS
43.1
-0.5
2
57.09
42.2

Associated Gene:

Gene:
NAPB
Ensembl Gene ID:
ENSAPLG00000014476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015125
7662544 - 7672310
9767