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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7667057_7668381_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7667057 - 7668381
Intron Length:
1325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
ACTCATGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TTTTCCTGAACA
Flanking Amino Acid:
GNAYKKADPQEAINCLNAAI
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
69.6
0.44
1
62
39
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
85.6
1.11
1.2
92.78
26.2

Associated Gene:

Gene:
NAPB
Ensembl Gene ID:
ENSAPLG00000014476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015125
7662544 - 7672310
9767