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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7669483_7669992_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7669483 - 7669992
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
GTATTGATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATGGTATTGATT
Flanking Amino Acid:
ADYYKGEESNSSANKCLLKV
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
73.6
0.53
1
66.6
43.7
Minor 5ss
38.1
-1.3
3.4
55.9
48.3
Minor BPS
48.6
-0
1.7
65.22
40

Associated Gene:

Gene:
NAPB
Ensembl Gene ID:
ENSAPLG00000014476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015125
7662544 - 7672310
9767