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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7670078_7670463_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7670078 - 7670463
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTTTCCTGACT
Flanking Amino Acid:
YQKAIEIYEQVGTNTMDNPL
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.9
35.3
Major BPS
80
0.75
1
78.6
31
Major PPT
74.8
0.56
0.9
70.7
34.1
Minor 5ss
33.5
-1.9
3.4
47.6
48
Minor BPS
66.1
0.59
1.7
83.44
37.7

Associated Gene:

Gene:
NAPB
Ensembl Gene ID:
ENSAPLG00000014476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015125
7662544 - 7672310
9767