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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7671234_7671617_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7671234 - 7671617
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GGTGTTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
ATTTTCTAAGTT
Flanking Amino Acid:
TDSRECKLLKKLLEAHEEQN
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
70
0.45
0.9
61.7
44.5
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
56.4
0.28
1.9
77.58
39.5

Associated Gene:

Gene:
NAPB
Ensembl Gene ID:
ENSAPLG00000014476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015125
7662544 - 7672310
9767