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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76776211_76777002_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76776211 - 76777002
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
TTGTTGTGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTTGTGAATA
Flanking Amino Acid:
FYSSAEGRNKKSRDASGSLR
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
65.1
0.34
1.1
62.2
43.3
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
49.9
-0
2.1
67.3
39.8

Associated Gene:

Gene:
KLF11
Ensembl Gene ID:
ENSAPLG00000009146
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009521
76775649 - 76786566
10918